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From 1969 on, with the exception of 1991-1993, he held a faculty position at the Department of Combinatorics and Optimization at the [[University of Waterloo]]'s [[University of Waterloo Faculty of Mathematics|Faculty of Mathematics]]. Edmonds retired in 1999.
From 1991 to 1993, he was involved in a dispute ("the Edmonds affair")<ref>[http://communications.uwaterloo.ca/Gazette/1992/Gazette,%20October%207,%201992/CAUT%20called%20in%20on%20Jack%20Edmonds%20case CAUT called in on Jack Edmonds case]</ref> <ref> [http://arts.uwaterloo.ca/~kwesthue/workplmobintro Editor's introduction], in: Kenneth Westhues, ed., Workplace Mobbing in Academe: Reports from Twenty Universities, Lewiston: NY: The Edwin Mellen Press, 2004</ref> with the University of Waterloo. The university claimed he had resigned, but he denied it. The conflict was resolved in 1993, and he returned to the university.
The Fifth Aussois Workshop on Combinatorial Optimization in 2001 was dedicated to Jack Edmonds.
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